Biochemical Society of Iran- e-Newsletters
J. Biol. Chem. Table of Contents for 17 August 2012; Vol. 287, No. 34

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Table of Contents

August 17, 2012; 287 (34)

Papers of the Week

  • E. coli Cells Grow in Arsenic♦: Growth of a Bacterium That Apparently Uses Arsenic Instead of Phosphorus Is a Consequence of Massive Ribosome Breakdown

    J. Biol. Chem. 2012 287: 28820. doi:10.1074/jbc.P112.394403

  • Human Defensin Is a Multiple Roadblock to HIV Infection♦: Multifaceted Mechanisms of HIV-1 Entry Inhibition by Human α-Defensin

    J. Biol. Chem. 2012 287: 28839. doi:10.1074/jbc.P112.375949

Reports

  • The Autophagy-related Protein Kinase Atg1 Interacts with the Ubiquitin-like Protein Atg8 via the Atg8 Family Interacting Motif to Facilitate Autophagosome Formation

    • Hitoshi Nakatogawa,
    • Shiran Ohbayashi,
    • Machiko Sakoh-Nakatogawa,
    • Soichiro Kakuta,
    • Sho W. Suzuki,
    • Hiromi Kirisako,
    • Chika Kondo-Kakuta,
    • Nobuo N. Noda,
    • Hayashi Yamamoto,
    • and Yoshinori Ohsumi
    J. Biol. Chem. 2012 287: 28503-28507. First Published on July 9, 2012, doi:10.1074/jbc.C112.387514

  • Growth of a Bacterium That Apparently Uses Arsenic Instead of Phosphorus Is a Consequence of Massive Ribosome Breakdown

    • Georgeta N. Basturea,
    • Thomas K. Harris,
    • and Murray P. Deutscher
    J. Biol. Chem. 2012 287: 28816-28819. First Published on July 13, 2012, doi:10.1074/jbc.C112.394403

Cell Biology

  • Rapid Uptake and Degradation of CXCL12 Depend on CXCR7 Carboxyl-terminal Serine/Threonine Residues

    • Frauke Hoffmann,
    • Wiebke Müller,
    • Dagmar Schütz,
    • Mark E. Penfold,
    • Yung H. Wong,
    • Stefan Schulz,
    • and Ralf Stumm
    J. Biol. Chem. 2012 287: 28362-28377. First Published on June 26, 2012, doi:10.1074/jbc.M111.335679

  • Polyphosphate Is a Novel Pro-inflammatory Regulator of Mast Cells and Is Located in Acidocalcisomes

    • David Moreno-Sanchez,
    • Laura Hernandez-Ruiz,
    • Felix A. Ruiz,
    • and Roberto Docampo
    J. Biol. Chem. 2012 287: 28435-28444. First Published on July 3, 2012, doi:10.1074/jbc.M112.385823

  • Conditional Inactivation of Blimp1 in Adult Mice Promotes Increased Bone Mass

    • Yoshiteru Miyauchi,
    • Hiroya Miyamoto,
    • Shigeyuki Yoshida,
    • Tomoaki Mori,
    • Hiroya Kanagawa,
    • Eri Katsuyama,
    • Atsuhiro Fujie,
    • Wu Hao,
    • Hiroko Hoshi,
    • Kana Miyamoto,
    • Yuiko Sato,
    • Tami Kobayashi,
    • Haruhiko Akiyama,
    • Hideo Morioka,
    • Morio Matsumoto,
    • Yoshiaki Toyama,
    • and Takeshi Miyamoto
    J. Biol. Chem. 2012 287: 28508-28517. First Published on July 3, 2012, doi:10.1074/jbc.M112.356634

  • A Molecular Mechanism for the Requirement of PAT-4 (Integrin-linked Kinase (ILK)) for the Localization of UNC-112 (Kindlin) to Integrin Adhesion Sites

    • Hiroshi Qadota,
    • Donald G. Moerman,
    • and Guy M. Benian
    J. Biol. Chem. 2012 287: 28537-28551. First Published on July 3, 2012, doi:10.1074/jbc.M112.354852

  • Dynamin-mediated Nephrin Phosphorylation Regulates Glucose-stimulated Insulin Release in Pancreatic Beta Cells

    • Jongmin Jeon,
    • Ingo Leibiger,
    • Tilo Moede,
    • Britta Walter,
    • Christian Faul,
    • Dony Maiguel,
    • Rodrigo Villarreal,
    • Johanna Guzman,
    • Per-Olof Berggren,
    • Peter Mundel,
    • Camillo Ricordi,
    • Sandra Merscher-Gomez,
    • and Alessia Fornoni
    J. Biol. Chem. 2012 287: 28932-28942. First Published on June 20, 2012, doi:10.1074/jbc.M112.389452
    AUTHOR'S CHOICE

  • Modification of the DNA Damage Response by Therapeutic CDK4/6 Inhibition

    • Jeffry L. Dean,
    • A. Kathleen McClendon,
    • and Erik S. Knudsen
    J. Biol. Chem. 2012 287: 29075-29087. First Published on June 25, 2012, doi:10.1074/jbc.M112.365494

  • Death Receptor 6 Induces Apoptosis Not through Type I or Type II Pathways, but via a Unique Mitochondria-dependent Pathway by Interacting with Bax Protein

    • Linlin Zeng,
    • Ting Li,
    • Derek C. Xu,
    • Jennifer Liu,
    • Guozhang Mao,
    • Mei-Zhen Cui,
    • Xueqi Fu,
    • and Xuemin Xu
    J. Biol. Chem. 2012 287: 29125-29133. First Published on July 3, 2012, doi:10.1074/jbc.M112.362038

  • Modulation of Histone Deacetylase 6 (HDAC6) Nuclear Import and Tubulin Deacetylase Activity through Acetylation

    • Yuanjing Liu,
    • Lirong Peng,
    • Edward Seto,
    • Suming Huang,
    • and Yi Qiu
    J. Biol. Chem. 2012 287: 29168-29174. First Published on July 9, 2012, doi:10.1074/jbc.M112.371120

  • Loss of Pannexin 1 Attenuates Melanoma Progression by Reversion to a Melanocytic Phenotype

    • Silvia Penuela,
    • Laszlo Gyenis,
    • Amber Ablack,
    • Jared M. Churko,
    • Amy C. Berger,
    • David W. Litchfield,
    • John D. Lewis,
    • and Dale W. Laird
    J. Biol. Chem. 2012 287: 29184-29193. First Published on June 29, 2012, doi:10.1074/jbc.M112.377176

Developmental Biology

  • α1- and α5-containing Laminins Regulate the Development of Bile Ducts via β1 Integrin Signals

    • Naoki Tanimizu,
    • Yamato Kikkawa,
    • Toshihiro Mitaka,
    • and Atsushi Miyajima
    J. Biol. Chem. 2012 287: 28586-28597. First Published on July 3, 2012, doi:10.1074/jbc.M112.350488

  • Cited2 Gene Controls Pluripotency and Cardiomyocyte Differentiation of Murine Embryonic Stem Cells through Oct4 Gene

    • Qiang Li,
    • Diana L. Ramírez-Bergeron,
    • Sally L. Dunwoodie,
    • and Yu-Chung Yang
    J. Biol. Chem. 2012 287: 29088-29100. First Published on July 3, 2012, doi:10.1074/jbc.M112.378034

DNA and Chromosomes

  • Structural Factors That Determine Selectivity of a High Fidelity DNA Polymerase for Deoxy-, Dideoxy-, and Ribonucleotides

    • Weina Wang,
    • Eugene Y. Wu,
    • Homme W. Hellinga,
    • and Lorena S. Beese
    J. Biol. Chem. 2012 287: 28215-28226. First Published on May 30, 2012, doi:10.1074/jbc.M112.366609

  • Kinetic Analysis of DNA Strand Joining by Chlorella Virus DNA Ligase and the Role of Nucleotidyltransferase Motif VI in Ligase Adenylylation

    • Poulami Samai and
    • Stewart Shuman
    J. Biol. Chem. 2012 287: 28609-28618. First Published on June 28, 2012, doi:10.1074/jbc.M112.380428

  • Saccharomyces cerevisiae Dmc1 and Rad51 Proteins Preferentially Function with Tid1 and Rad54 Proteins, Respectively, to Promote DNA Strand Invasion during Genetic Recombination

    • Amitabh V. Nimonkar,
    • Christopher C. Dombrowski,
    • Joseph S. Siino,
    • Alicja Z. Stasiak,
    • Andrzej Stasiak,
    • and Stephen C. Kowalczykowski
    J. Biol. Chem. 2012 287: 28727-28737. First Published on June 29, 2012, doi:10.1074/jbc.M112.373290

Enzymology

  • Unprecedented Rates and Efficiencies Revealed for New Natural Split Inteins from Metagenomic Sources

    • Patricia Carvajal-Vallejos,
    • Roser Pallissé,
    • Henning D. Mootz,
    • and Stefan R. Schmidt
    J. Biol. Chem. 2012 287: 28686-28696. First Published on June 28, 2012, doi:10.1074/jbc.M112.372680

  • Endo-exo Synergism in Cellulose Hydrolysis Revisited

    • Jürgen Jalak,
    • Mihhail Kurašin,
    • Hele Teugjas,
    • and Priit Väljamäe
    J. Biol. Chem. 2012 287: 28802-28815. First Published on June 25, 2012, doi:10.1074/jbc.M112.381624

  • A Single Mutation in a Tunnel to the Active Site Changes the Mechanism and Kinetics of Product Release in Haloalkane Dehalogenase LinB

    • Lada Biedermannová,
    • Zbyněk Prokop,
    • Artur Gora,
    • Eva Chovancová,
    • Mihály Kovács,
    • Jiří Damborský,
    • and Rebecca C. Wade
    J. Biol. Chem. 2012 287: 29062-29074. First Published on June 28, 2012, doi:10.1074/jbc.M112.377853

  • Structural Study Reveals That Ser-354 Determines Substrate Specificity on Human Histidine Decarboxylase

    • Hirofumi Komori,
    • Yoko Nitta,
    • Hiroshi Ueno,
    • and Yoshiki Higuchi
    J. Biol. Chem. 2012 287: 29175-29183. First Published on July 5, 2012, doi:10.1074/jbc.M112.381897

Gene Regulation

  • Diindolylmethane-mediated Gli1 Protein Suppression Induces Anoikis in Ovarian Cancer Cells in Vitro and Blocks Tumor Formation Ability in Vivo

    • Prabodh K. Kandala and
    • Sanjay K. Srivastava
    J. Biol. Chem. 2012 287: 28745-28754. First Published on July 6, 2012, doi:10.1074/jbc.M112.351379

  • Expression of Proviral Integration Site for Moloney Murine Leukemia Virus 1 (Pim-1) Is Post-transcriptionally Regulated by Tristetraprolin in Cancer Cells

    • Hong Kyeung Kim,
    • Chae Won Kim,
    • Mai-Tram Vo,
    • Hyun Hee Lee,
    • Ji Young Lee,
    • Nal Ae Yoon,
    • Chae Yeong Lee,
    • Chang Hoon Moon,
    • Young Joo Min,
    • Jeong Woo Park,
    • and Wha Ja Cho
    J. Biol. Chem. 2012 287: 28770-28778. First Published on June 14, 2012, doi:10.1074/jbc.M112.376483

  • Occludin Is a Direct Target of Thyroid Transcription Factor-1 (TTF-1/NKX2–1)

    • E. Aaron Runkle,
    • Shawn J. Rice,
    • Ji Qi,
    • Dustin Masser,
    • David A. Antonetti,
    • Monte M. Winslow,
    • and David Mu
    J. Biol. Chem. 2012 287: 28790-28801. First Published on July 2, 2012, doi:10.1074/jbc.M112.367987

  • Down-regulation of NF-κB Transcriptional Activity in HIV-associated Kidney Disease by BRD4 Inhibition

    • Guangtao Zhang,
    • Ruijie Liu,
    • Yifei Zhong,
    • Alexander N. Plotnikov,
    • Weijia Zhang,
    • Lei Zeng,
    • Elena Rusinova,
    • Guillermo Gerona-Nevarro,
    • Natasha Moshkina,
    • Jennifer Joshua,
    • Peter Y. Chuang,
    • Michael Ohlmeyer,
    • John Cijiang He,
    • and Ming-Ming Zhou
    J. Biol. Chem. 2012 287: 28840-28851. First Published on May 29, 2012, doi:10.1074/jbc.M112.359505

  • Functional Importance of Dicer Protein in the Adaptive Cellular Response to Hypoxia

    • J. J. David Ho,
    • Julie L. Metcalf,
    • Matthew S. Yan,
    • Paul J. Turgeon,
    • Jenny Jing Wang,
    • Maria Chalsev,
    • Tania N. Petruzziello-Pellegrini,
    • Albert K. Y. Tsui,
    • Jeff Z. He,
    • Helena Dhamko,
    • H. S. Jeffrey Man,
    • G. Brett Robb,
    • Bin T. Teh,
    • Michael Ohh,
    • and Philip A. Marsden
    J. Biol. Chem. 2012 287: 29003-29020. First Published on June 28, 2012, doi:10.1074/jbc.M112.373365

  • The AMP-activated Protein Kinase Snf1 Regulates Transcription Factor Binding, RNA Polymerase II Activity, and mRNA Stability of Glucose-repressed Genes in Saccharomyces cerevisiae

    • Elton T. Young,
    • Chao Zhang,
    • Kevan M. Shokat,
    • Pabitra K. Parua,
    • and Katherine A. Braun
    J. Biol. Chem. 2012 287: 29021-29034. First Published on July 2, 2012, doi:10.1074/jbc.M112.380147

  • Heat Shock and Caloric Restriction Have a Synergistic Effect on the Heat Shock Response in a sir2.1-dependent Manner in Caenorhabditis elegans

    • Rachel Raynes,
    • Bruce D. Leckey, Jr.,
    • Kevin Nguyen,
    • and Sandy D. Westerheide
    J. Biol. Chem. 2012 287: 29045-29053. First Published on July 9, 2012, doi:10.1074/jbc.M112.353714

Genomics and Proteomics

  • The Stoichiometric Transition from Zn6Cu1-Metallothionein to Zn7-Metallothionein Underlies the Up-regulation of Metallothionein (MT) Expression: QUANTITATIVE ANALYSIS OF MT-METAL LOAD IN EYE CELLS

    • Lydia Alvarez,
    • Hector Gonzalez-Iglesias,
    • Montserrat Garcia,
    • Sikha Ghosh,
    • Alfredo Sanz-Medel,
    • and Miguel Coca-Prados
    J. Biol. Chem. 2012 287: 28456-28469. First Published on June 21, 2012, doi:10.1074/jbc.M112.365015

Glycobiology and Extracellular Matrices

  • Galactosylated Fucose Epitopes in Nematodes: INCREASED EXPRESSION IN A CAENORHABDITIS MUTANT ASSOCIATED WITH ALTERED LECTIN SENSITIVITY AND OCCURRENCE IN PARASITIC SPECIES

    • Shi Yan (闫 石),
    • Silvia Bleuler-Martinez,
    • David Fernando Plaza,
    • Markus Künzler,
    • Markus Aebi,
    • Anja Joachim,
    • Ebrahim Razzazi-Fazeli,
    • Verena Jantsch,
    • Rudolf Geyer,
    • Iain B. H. Wilson,
    • and Katharina Paschinger
    J. Biol. Chem. 2012 287: 28276-28290. First Published on June 25, 2012, doi:10.1074/jbc.M112.353128

  • Developmental Expression of the Neuron-specific N-Acetylglucosaminyltransferase Vb (GnT-Vb/IX) and Identification of Its in Vivo Glycan Products in Comparison with Those of Its Paralog, GnT-V

    • Jin Kyu Lee,
    • Russell T. Matthews,
    • Jae-Min Lim,
    • Kiara Swanier,
    • Lance Wells,
    • and J. Michael Pierce
    J. Biol. Chem. 2012 287: 28526-28536. First Published on June 19, 2012, doi:10.1074/jbc.M112.367565

  • Binding of N-Acetylglucosamine (GlcNAc) β1–6-branched Oligosaccharide Acceptors to β4-Galactosyltransferase I Reveals a New Ligand Binding Mode

    • Boopathy Ramakrishnan,
    • Elizabeth Boeggeman,
    • and Pradman K. Qasba
    J. Biol. Chem. 2012 287: 28666-28674. First Published on June 27, 2012, doi:10.1074/jbc.M112.373514
    AUTHOR'S CHOICE

  • O-Linked β-N-Acetylglucosaminylation (O-GlcNAcylation) in Primary and Metastatic Colorectal Cancer Clones and Effect of N-Acetyl-β-d-glucosaminidase Silencing on Cell Phenotype and Transcriptome

    • Galit Yehezkel,
    • Liz Cohen,
    • Adi Kliger,
    • Esther Manor,
    • and Isam Khalaila
    J. Biol. Chem. 2012 287: 28755-28769. First Published on June 22, 2012, doi:10.1074/jbc.M112.345546

  • Metabolism of Vertebrate Amino Sugars with N-Glycolyl Groups: MECHANISMS UNDERLYING GASTROINTESTINAL INCORPORATION OF THE NON-HUMAN SIALIC ACID XENO-AUTOANTIGEN N-GLYCOLYLNEURAMINIC ACID

    • Kalyan Banda,
    • Christopher J. Gregg,
    • Renee Chow,
    • Nissi M. Varki,
    • and Ajit Varki
    J. Biol. Chem. 2012 287: 28852-28864. First Published on June 12, 2012, doi:10.1074/jbc.M112.364182

  • Metabolism of Vertebrate Amino Sugars with N-Glycolyl Groups: ELUCIDATING THE INTRACELLULAR FATE OF THE NON-HUMAN SIALIC ACID N-GLYCOLYLNEURAMINIC ACID

    • Anne K. Bergfeld,
    • Oliver M. T. Pearce,
    • Sandra L. Diaz,
    • Tho Pham,
    • and Ajit Varki
    J. Biol. Chem. 2012 287: 28865-28881. First Published on June 12, 2012, doi:10.1074/jbc.M112.363549

  • Metabolism of Vertebrate Amino Sugars with N-Glycolyl Groups: INTRACELLULAR β-O-LINKED N-GLYCOLYLGLUCOSAMINE (GlcNGc), UDP-GlcNGc, AND THE BIOCHEMICAL AND STRUCTURAL RATIONALE FOR THE SUBSTRATE TOLERANCE OF β-O-LINKED β-N-ACETYLGLUCOSAMINIDASE

    • Matthew S. Macauley,
    • Jefferson Chan,
    • Wesley F. Zandberg,
    • Yuan He,
    • Garrett E. Whitworth,
    • Keith A. Stubbs,
    • Scott A. Yuzwa,
    • Andrew J. Bennet,
    • Ajit Varki,
    • Gideon J. Davies,
    • and David J. Vocadlo
    J. Biol. Chem. 2012 287: 28882-28897. First Published on June 12, 2012, doi:10.1074/jbc.M112.363721

  • Metabolism of Vertebrate Amino Sugars with N-Glycolyl Groups: INCORPORATION OF N-GLYCOLYLHEXOSAMINES INTO MAMMALIAN GLYCANS BY FEEDING N-GLYCOLYLGALACTOSAMINE

    • Anne K. Bergfeld,
    • Oliver M. T. Pearce,
    • Sandra L. Diaz,
    • Roger Lawrence,
    • David J. Vocadlo,
    • Biswa Choudhury,
    • Jeffrey D. Esko,
    • and Ajit Varki
    J. Biol. Chem. 2012 287: 28898-28916. First Published on June 12, 2012, doi:10.1074/jbc.M112.363499

  • Metabolism of Vertebrate Amino Sugars with N-Glycolyl Groups: RESISTANCE OF α2–8-LINKED N-GLYCOLYLNEURAMINIC ACID TO ENZYMATIC CLEAVAGE

    • Leela R. L. Davies,
    • Oliver M. T. Pearce,
    • Matthew B. Tessier,
    • Siavash Assar,
    • Victoria Smutova,
    • Maria Pajunen,
    • Mizuki Sumida,
    • Chihiro Sato,
    • Ken Kitajima,
    • Jukka Finne,
    • Pascal Gagneux,
    • Alexey Pshezhetsky,
    • Robert Woods,
    • and Ajit Varki
    J. Biol. Chem. 2012 287: 28917-28931. First Published on June 12, 2012, doi:10.1074/jbc.M112.365056

  • Chemoenzymatic Synthesis of Heparin Oligosaccharides with both Anti-factor Xa and Anti-factor IIa Activities

    • Yongmei Xu,
    • Elizabeth H. Pempe,
    • and Jian Liu
    J. Biol. Chem. 2012 287: 29054-29061. First Published on July 6, 2012, doi:10.1074/jbc.M112.358523

  • Molecular Basis for Protein-specific Transfer of N-Acetylgalactosamine to N-Linked Glycans by the Glycosyltransferases β1,4-N-Acetylgalactosaminyl Transferase 3 (β4GalNAc-T3) and β4GalNAc-T4

    • Dorothy Fiete,
    • Mary Beranek,
    • and Jacques U. Baenziger
    J. Biol. Chem. 2012 287: 29194-29203. First Published on June 21, 2012, doi:10.1074/jbc.M112.371567

  • Peptide-specific Transfer of N-Acetylgalactosamine to O-Linked Glycans by the Glycosyltransferases β1,4-N-Acetylgalactosaminyl Transferase 3 (β4GalNAc-T3) and β4GalNAc-T4

    • Dorothy Fiete,
    • Mary Beranek,
    • and Jacques U. Baenziger
    J. Biol. Chem. 2012 287: 29204-29212. First Published on June 21, 2012, doi:10.1074/jbc.M112.371880

Immunology

  • Chemically Programmed Bispecific Antibodies That Recruit and Activate T Cells

    • Huiting Cui,
    • Joshua D. Thomas,
    • Terrence R. Burke, Jr.,
    • and Christoph Rader
    J. Biol. Chem. 2012 287: 28206-28214. First Published on July 3, 2012, doi:10.1074/jbc.M112.384594

  • Visfatin/Pre-B-cell Colony-enhancing Factor (PBEF), a Proinflammatory and Cell Motility-changing Factor in Rheumatoid Arthritis

    • Florian M. P. Meier,
    • Klaus W. Frommer,
    • Marvin A. Peters,
    • Fabia Brentano,
    • Stephanie Lefèvre,
    • Dirk Schröder,
    • Diego Kyburz,
    • Jürgen Steinmeyer,
    • Stefan Rehart,
    • Steffen Gay,
    • Ulf Müller-Ladner,
    • and Elena Neumann
    J. Biol. Chem. 2012 287: 28378-28385. First Published on July 5, 2012, doi:10.1074/jbc.M111.312884

  • TRIM32 Protein Modulates Type I Interferon Induction and Cellular Antiviral Response by Targeting MITA/STING Protein for K63-linked Ubiquitination

    • Jing Zhang,
    • Ming-Ming Hu,
    • Yan-Yi Wang,
    • and Hong-Bing Shu
    J. Biol. Chem. 2012 287: 28646-28655. First Published on June 28, 2012, doi:10.1074/jbc.M112.362608

  • The Antiepileptic Drug Valproic Acid Restores T Cell Homeostasis and Ameliorates Pathogenesis of Experimental Autoimmune Encephalomyelitis

    • Jie Lv,
    • Changsheng Du,
    • Wei Wei,
    • Zhiying Wu,
    • Guixian Zhao,
    • Zhenxin Li,
    • and Xin Xie
    J. Biol. Chem. 2012 287: 28656-28665. First Published on June 25, 2012, doi:10.1074/jbc.M112.356584
    AUTHOR'S CHOICE

  • Structural Requirements for Recognition of Major Histocompatibility Complex Class II by Membrane-associated RING-CH (MARCH) Protein E3 Ligases

    • Martin Jahnke,
    • John Trowsdale,
    • and Adrian P. Kelly
    J. Biol. Chem. 2012 287: 28779-28789. First Published on July 3, 2012, doi:10.1074/jbc.M112.381541
    AUTHOR'S CHOICE

  • TRAF Family Member-associated NF-κB Activator (TANK) Is a Negative Regulator of Osteoclastogenesis and Bone Formation

    • Kenta Maruyama,
    • Tatsukata Kawagoe,
    • Takeshi Kondo,
    • Shizuo Akira,
    • and Osamu Takeuchi
    J. Biol. Chem. 2012 287: 29114-29124. First Published on July 6, 2012, doi:10.1074/jbc.M112.347799

Lipids

  • The ABCG5 ABCG8 Sterol Transporter Opposes the Development of Fatty Liver Disease and Loss of Glycemic Control Independently of Phytosterol Accumulation

    • Kai Su,
    • Nadezhda S. Sabeva,
    • Jingjing Liu,
    • Yuhuan Wang,
    • Saloni Bhatnagar,
    • Deneys R. van der Westhuyzen,
    • and Gregory A. Graf
    J. Biol. Chem. 2012 287: 28564-28575. First Published on June 19, 2012, doi:10.1074/jbc.M112.360081

Membrane Biology

  • A Mechanism of Intracellular P2X Receptor Activation

    • Venketesh Sivaramakrishnan and
    • Samuel J. Fountain
    J. Biol. Chem. 2012 287: 28315-28326. First Published on June 26, 2012, doi:10.1074/jbc.M112.372565

  • Ca2+ Induces Spontaneous Dephosphorylation of a Novel P5A-type ATPase

    • Danny Mollerup Sørensen,
    • Annette B. Møller,
    • Mia K. Jakobsen,
    • Michael K. Jensen,
    • Peter Vangheluwe,
    • Morten J. Buch-Pedersen,
    • and Michael G. Palmgren
    J. Biol. Chem. 2012 287: 28336-28348. First Published on June 22, 2012, doi:10.1074/jbc.M112.387191

  • Mechanistic Insights into Regulated Cargo Binding by ACAP1 Protein

    • Ming Bai,
    • Xiaoyun Pang,
    • Jizhong Lou,
    • Qiangjun Zhou,
    • Kai Zhang,
    • Jun Ma,
    • Jian Li,
    • Fei Sun,
    • and Victor W. Hsu
    J. Biol. Chem. 2012 287: 28675-28685. First Published on May 29, 2012, doi:10.1074/jbc.M112.378810

Metabolism

  • Long Isoform Mouse Selenoprotein P (Sepp1) Supplies Rat Myoblast L8 Cells with Selenium via Endocytosis Mediated by Heparin Binding Properties and Apolipoprotein E Receptor-2 (ApoER2)

    • Suguru Kurokawa,
    • Kristina E. Hill,
    • W. Hayes McDonald,
    • and Raymond F. Burk
    J. Biol. Chem. 2012 287: 28717-28726. First Published on July 2, 2012, doi:10.1074/jbc.M112.383521

  • Bone Marrow Oxytocin Mediates the Anabolic Action of Estrogen on the Skeleton

    • Graziana Colaianni,
    • Li Sun,
    • Adriana Di Benedetto,
    • Roberto Tamma,
    • Ling-Ling Zhu,
    • Jay Cao,
    • Maria Grano,
    • Tony Yuen,
    • Sylvia Colucci,
    • Concetta Cuscito,
    • Lucia Mancini,
    • Jianhua Li,
    • Katsuhiko Nishimori,
    • Itai Bab,
    • Heon-Jin Lee,
    • Jameel Iqbal,
    • W. Scott Young III,
    • Clifford Rosen,
    • Alberta Zallone,
    • and Mone Zaidi
    J. Biol. Chem. 2012 287: 29159-29167. First Published on July 2, 2012, doi:10.1074/jbc.M112.365049

Microbiology

Molecular Bases of Disease

  • Methionine Oxidation Perturbs the Structural Core of the Prion Protein and Suggests a Generic Misfolding Pathway

    • Nadine D. Younan,
    • Rebecca C. Nadal,
    • Paul Davies,
    • David R. Brown,
    • and John H. Viles
    J. Biol. Chem. 2012 287: 28263-28275. First Published on May 31, 2012, doi:10.1074/jbc.M112.354779
    AUTHOR'S CHOICE

  • α-Galactosidase Aggregation Is a Determinant of Pharmacological Chaperone Efficacy on Fabry Disease Mutants

    • Aleksandra Siekierska,
    • Greet De Baets,
    • Joke Reumers,
    • Rodrigo Gallardo,
    • Stanislav Rudyak,
    • Kerensa Broersen,
    • Jose Couceiro,
    • Joost Van Durme,
    • Joost Schymkowitz,
    • and Frederic Rousseau
    J. Biol. Chem. 2012 287: 28386-28397. First Published on July 6, 2012, doi:10.1074/jbc.M112.351056

  • Conformational Changes Relevant to Channel Activity and Folding within the first Nucleotide Binding Domain of the Cystic Fibrosis Transmembrane Conductance Regulator

    • Rhea P. Hudson,
    • P. Andrew Chong,
    • Irina I. Protasevich,
    • Robert Vernon,
    • Efrat Noy,
    • Hermann Bihler,
    • Jian Li An,
    • Ori Kalid,
    • Inbal Sela-Culang,
    • Martin Mense,
    • Hanoch Senderowitz,
    • Christie G. Brouillette,
    • and Julie D. Forman-Kay
    J. Biol. Chem. 2012 287: 28480-28494. First Published on June 21, 2012, doi:10.1074/jbc.M112.371138

  • Ataxin-3 Regulates Aggresome Formation of Copper-Zinc Superoxide Dismutase (SOD1) by Editing K63-linked Polyubiquitin Chains

    • Hongfeng Wang,
    • Zheng Ying,
    • and Guanghui Wang
    J. Biol. Chem. 2012 287: 28576-28585. First Published on July 3, 2012, doi:10.1074/jbc.M111.299990

  • X-linked Sideroblastic Anemia Due to Carboxyl-terminal ALAS2 Mutations That Cause Loss of Binding to the β-Subunit of Succinyl-CoA Synthetase (SUCLA2)

    • David F. Bishop,
    • Vassili Tchaikovskii,
    • A. Victor Hoffbrand,
    • Marie E. Fraser,
    • and Steven Margolis
    J. Biol. Chem. 2012 287: 28943-28955. First Published on June 27, 2012, doi:10.1074/jbc.M111.306423

  • Mutations in the GlyT2 Gene (SLC6A5) Are a Second Major Cause of Startle Disease

    • Eloisa Carta,
    • Seo-Kyung Chung,
    • Victoria M. James,
    • Angela Robinson,
    • Jennifer L. Gill,
    • Nathalie Remy,
    • Jean-François Vanbellinghen,
    • Cheney J. G. Drew,
    • Sophie Cagdas,
    • Duncan Cameron,
    • Frances M. Cowan,
    • Mireria Del Toro,
    • Gail E. Graham,
    • Adnan Y. Manzur,
    • Amira Masri,
    • Serge Rivera,
    • Emmanuel Scalais,
    • Rita Shiang,
    • Kate Sinclair,
    • Catriona A. Stuart,
    • Marina A. J. Tijssen,
    • Grahame Wise,
    • Sameer M. Zuberi,
    • Kirsten Harvey,
    • Brian R. Pearce,
    • Maya Topf,
    • Rhys H. Thomas,
    • Stéphane Supplisson,
    • Mark I. Rees,
    • and Robert J. Harvey
    J. Biol. Chem. 2012 287: 28975-28985. First Published on June 14, 2012, doi:10.1074/jbc.M112.372094

  • A Novel Dominant Hyperekplexia Mutation Y705C Alters Trafficking and Biochemical Properties of the Presynaptic Glycine Transporter GlyT2

    • Cecilio Giménez,
    • Gonzalo Pérez-Siles,
    • Jaime Martínez-Villarreal,
    • Esther Arribas-González,
    • Esperanza Jiménez,
    • Enrique Núñez,
    • Jaime de Juan-Sanz,
    • Enrique Fernández-Sánchez,
    • Noemí García-Tardón,
    • Ignacio Ibáñez,
    • Valeria Romanelli,
    • Julián Nevado,
    • Victoria M. James,
    • Maya Topf,
    • Seo-Kyung Chung,
    • Rhys H. Thomas,
    • Lourdes R. Desviat,
    • Carmen Aragón,
    • Francisco Zafra,
    • Mark I. Rees,
    • Pablo Lapunzina,
    • Robert J. Harvey,
    • and Beatriz López-Corcuera
    J. Biol. Chem. 2012 287: 28986-29002. First Published on June 29, 2012, doi:10.1074/jbc.M111.319244

Molecular Biophysics

  • Sequence Determinants of a Microtubule Tip Localization Signal (MtLS)

    • Rubén M. Buey,
    • Indrani Sen,
    • Oliver Kortt,
    • Renu Mohan,
    • David Gfeller,
    • Dmitry Veprintsev,
    • Ines Kretzschmar,
    • Jörg Scheuermann,
    • Dario Neri,
    • Vincent Zoete,
    • Olivier Michielin,
    • José María de Pereda,
    • Anna Akhmanova,
    • Rudolf Volkmer,
    • and Michel O. Steinmetz
    J. Biol. Chem. 2012 287: 28227-28242. First Published on June 13, 2012, doi:10.1074/jbc.M112.373928

  • Single-molecule Analysis of Inhibitory Pausing States of V1-ATPase

    • Naciye Esma Uner,
    • Yoshihiro Nishikawa,
    • Daichi Okuno,
    • Masahiro Nakano,
    • Ken Yokoyama,
    • and Hiroyuki Noji
    J. Biol. Chem. 2012 287: 28327-28335. First Published on June 26, 2012, doi:10.1074/jbc.M112.381194

Neurobiology

  • Methylglyoxal Activates Nociceptors through Transient Receptor Potential Channel A1 (TRPA1): A POSSIBLE MECHANISM OF METABOLIC NEUROPATHIES

    • Mirjam J. Eberhardt,
    • Milos R. Filipovic,
    • Andreas Leffler,
    • Jeanne de la Roche,
    • Katrin Kistner,
    • Michael J. Fischer,
    • Thomas Fleming,
    • Katharina Zimmermann,
    • Ivana Ivanovic-Burmazovic,
    • Peter P. Nawroth,
    • Angelika Bierhaus,
    • Peter W. Reeh,
    • and Susanne K. Sauer
    J. Biol. Chem. 2012 287: 28291-28306. First Published on June 27, 2012, doi:10.1074/jbc.M111.328674

  • Proteomic Analysis of α-Amino-3-hydroxy-5-methyl-4-isoxazole Propionate Receptor Complexes

    • Myoung-Goo Kang,
    • Mutsuo Nuriya,
    • Yurong Guo,
    • Kevin D. Martindale,
    • Daniel Z. Lee,
    • and Richard L. Huganir
    J. Biol. Chem. 2012 287: 28632-28645. First Published on June 29, 2012, doi:10.1074/jbc.M111.336644
    AUTHOR'S CHOICE

Protein Structure and Folding

  • Characterization of Semisynthetic and Naturally Nα-Acetylated α-Synuclein in Vitro and in Intact Cells: IMPLICATIONS FOR AGGREGATION AND CELLULAR PROPERTIES OF α-SYNUCLEIN

    • Bruno Fauvet,
    • Mohamed-Bilal Fares,
    • Filsy Samuel,
    • Igor Dikiy,
    • Anurag Tandon,
    • David Eliezer,
    • and Hilal A. Lashuel
    J. Biol. Chem. 2012 287: 28243-28262. First Published on June 20, 2012, doi:10.1074/jbc.M112.383711

  • The Bicyclic Intermediate Structure Provides Insights into the Desuccinylation Mechanism of Human Sirtuin 5 (SIRT5)

    • Yeyun Zhou,
    • Hongmin Zhang,
    • Bin He,
    • Jintang Du,
    • Hening Lin,
    • Richard A. Cerione,
    • and Quan Hao
    J. Biol. Chem. 2012 287: 28307-28314. First Published on July 5, 2012, doi:10.1074/jbc.M112.384511

  • The Structure of Vimentin Linker 1 and Rod 1B Domains Characterized by Site-directed Spin-labeling Electron Paramagnetic Resonance (SDSL-EPR) and X-ray Crystallography

    • Atya Aziz,
    • John F. Hess,
    • Madhu S. Budamagunta,
    • John C. Voss,
    • Alexandre P. Kuzin,
    • Yuanpeng J. Huang,
    • Rong Xiao,
    • Gaetano T. Montelione,
    • Paul G. FitzGerald,
    • and John F. Hunt
    J. Biol. Chem. 2012 287: 28349-28361. First Published on June 26, 2012, doi:10.1074/jbc.M111.334011

  • Thoracic Aortic Aneurysm (TAAD)-causing Mutation in Actin Affects Formin Regulation of Polymerization

    • Lindsey E. Malloy,
    • Kuo-Kuang Wen,
    • Alyson R. Pierick,
    • Elesa W. Wedemeyer,
    • Sarah E. Bergeron,
    • Nicole D. Vanderpool,
    • Melissa McKane,
    • Peter A. Rubenstein,
    • and Heather L. Bartlett
    J. Biol. Chem. 2012 287: 28398-28408. First Published on June 29, 2012, doi:10.1074/jbc.M112.371914

  • Structural Basis for the Reaction Mechanism of S-Carbamoylation of HypE by HypF in the Maturation of [NiFe]-Hydrogenases

    • Yasuhito Shomura and
    • Yoshiki Higuchi
    J. Biol. Chem. 2012 287: 28409-28419. First Published on June 27, 2012, doi:10.1074/jbc.M112.387134

  • DnaK Chaperone-dependent Disaggregation by Caseinolytic Peptidase B (ClpB) Mutants Reveals Functional Overlap in the N-terminal Domain and Nucleotide-binding Domain-1 Pore Tyrosine

    • Shannon M. Doyle,
    • Joel R. Hoskins,
    • and Sue Wickner
    J. Biol. Chem. 2012 287: 28470-28479. First Published on June 28, 2012, doi:10.1074/jbc.M112.383091

  • Structural Determinants of the β-Selectivity of a Bacterial Aminotransferase

    • Gjalt G. Wybenga,
    • Ciprian G. Crismaru,
    • Dick B. Janssen,
    • and Bauke W. Dijkstra
    J. Biol. Chem. 2012 287: 28495-28502. First Published on June 28, 2012, doi:10.1074/jbc.M112.375238

  • The Rab Interacting Lysosomal Protein (RILP) Homology Domain Functions as a Novel Effector Domain for Small GTPase Rab36: Rab36 REGULATES RETROGRADE MELANOSOME TRANSPORT IN MELANOCYTES

    • Takahide Matsui,
    • Norihiko Ohbayashi,
    • and Mitsunori Fukuda
    J. Biol. Chem. 2012 287: 28619-28631. First Published on June 27, 2012, doi:10.1074/jbc.M112.370544

  • Studies of Human 2,4-Dienoyl CoA Reductase Shed New Light on Peroxisomal β-Oxidation of Unsaturated Fatty Acids

    • Tian Hua,
    • Dong Wu,
    • Wei Ding,
    • Jiangyun Wang,
    • Neil Shaw,
    • and Zhi-Jie Liu
    J. Biol. Chem. 2012 287: 28956-28965. First Published on June 28, 2012, doi:10.1074/jbc.M112.385351

Protein Synthesis and Degradation

  • Functional Characterization of the Role of the N-terminal Domain of the c/Nip1 Subunit of Eukaryotic Initiation Factor 3 (eIF3) in AUG Recognition

    • Martina Karásková,
    • Stanislava Gunišová,
    • Anna Herrmannová,
    • Susan Wagner,
    • Vanda Munzarová,
    • and Leoš Shivaya Valášek
    J. Biol. Chem. 2012 287: 28420-28434. First Published on June 20, 2012, doi:10.1074/jbc.M112.386656
    AUTHOR'S CHOICE

  • The Mechanism of Pre-transfer Editing in Yeast Mitochondrial Threonyl-tRNA Synthetase

    • Jiqiang Ling,
    • Kaitlyn M. Peterson,
    • Ivana Simonović,
    • Dieter Söll,
    • and Miljan Simonović
    J. Biol. Chem. 2012 287: 28518-28525. First Published on July 6, 2012, doi:10.1074/jbc.M112.372920

  • Elongation Factor G Is a Critical Target during Oxidative Damage to the Translation System of Escherichia coli

    • Takanori Nagano,
    • Kouji Kojima,
    • Toru Hisabori,
    • Hidenori Hayashi,
    • Eugene Hayato Morita,
    • Takashi Kanamori,
    • Tomoko Miyagi,
    • Takuya Ueda,
    • and Yoshitaka Nishiyama
    J. Biol. Chem. 2012 287: 28697-28704. First Published on July 6, 2012, doi:10.1074/jbc.M112.378067

Signal Transduction

  • Role of Melanoma Inhibitor of Apoptosis (ML-IAP) Protein, a Member of the Baculoviral IAP Repeat (BIR) Domain Family, in the Regulation of C-RAF Kinase and Cell Migration

    • Tripat Kaur Oberoi-Khanuja,
    • Christiaan Karreman,
    • Sarit Larisch,
    • Ulf R. Rapp,
    • and Krishnaraj Rajalingam
    J. Biol. Chem. 2012 287: 28445-28455. First Published on June 18, 2012, doi:10.1074/jbc.M112.341297

  • Reversible Modification of Adenomatous Polyposis Coli (APC) with K63-linked Polyubiquitin Regulates the Assembly and Activity of the β-Catenin Destruction Complex

    • Hoanh Tran and
    • Paul Polakis
    J. Biol. Chem. 2012 287: 28552-28563. First Published on July 3, 2012, doi:10.1074/jbc.M112.387878

  • Distinct Regulation of Cytoplasmic Calcium Signals and Cell Death Pathways by Different Plasma Membrane Calcium ATPase Isoforms in MDA-MB-231 Breast Cancer Cells

    • Merril C. Curry,
    • Nicole A. Luk,
    • Paraic A. Kenny,
    • Sarah J. Roberts-Thomson,
    • and Gregory R. Monteith
    J. Biol. Chem. 2012 287: 28598-28608. First Published on June 25, 2012, doi:10.1074/jbc.M112.364737

  • Post-transcriptional Inhibition of Luciferase Reporter Assays by the Nod-like Receptor Proteins NLRX1 and NLRC3

    • Arthur Ling,
    • Fraser Soares,
    • David O. Croitoru,
    • Ivan Tattoli,
    • Leticia A. M. Carneiro,
    • Michele Boniotto,
    • Szilvia Benko,
    • Dana J. Philpott,
    • and Stephen E. Girardin
    J. Biol. Chem. 2012 287: 28705-28716. First Published on June 20, 2012, doi:10.1074/jbc.M111.333146

  • Eukaryotic Initiation Factor 2 (eIF2) Signaling Regulates Proinflammatory Cytokine Expression and Bacterial Invasion

    • Niraj Shrestha,
    • Wael Bahnan,
    • David J. Wiley,
    • Glen Barber,
    • Kenneth A. Fields,
    • and Kurt Schesser
    J. Biol. Chem. 2012 287: 28738-28744. First Published on July 2, 2012, doi:10.1074/jbc.M112.375915

  • Amino-terminal Cysteine Residues Differentially Influence RGS4 Protein Plasma Membrane Targeting, Intracellular Trafficking, and Function

    • Guillaume Bastin,
    • Kevin Singh,
    • Kaveesh Dissanayake,
    • Alexandra S. Mighiu,
    • Aliya Nurmohamed,
    • and Scott P. Heximer
    J. Biol. Chem. 2012 287: 28966-28974. First Published on June 29, 2012, doi:10.1074/jbc.M112.345629

  • SnoN Suppresses Maturation of Chondrocytes by Mediating Signal Cross-talk between Transforming Growth Factor-β and Bone Morphogenetic Protein Pathways

    • Ichiro Kawamura,
    • Shingo Maeda,
    • Katsuyuki Imamura,
    • Takao Setoguchi,
    • Masahiro Yokouchi,
    • Yasuhiro Ishidou,
    • and Setsuro Komiya
    J. Biol. Chem. 2012 287: 29101-29113. First Published on July 5, 2012, doi:10.1074/jbc.M112.349415

  • Conversion of a Paracrine Fibroblast Growth Factor into an Endocrine Fibroblast Growth Factor

    • Regina Goetz,
    • Mutsuko Ohnishi,
    • Serkan Kir,
    • Hiroshi Kurosu,
    • Lei Wang,
    • Johanne Pastor,
    • Jinghong Ma,
    • Weiming Gai,
    • Makoto Kuro-o,
    • Mohammed S. Razzaque,
    • and Moosa Mohammadi
    J. Biol. Chem. 2012 287: 29134-29146. First Published on June 25, 2012, doi:10.1074/jbc.M112.342980

  • Angiotensin-II and MARCKS: A HYDROGEN PEROXIDE- AND RAC1-DEPENDENT SIGNALING PATHWAY IN VASCULAR ENDOTHELIUM

    • Hermann Kalwa,
    • Juliano L. Sartoretto,
    • Simone M. Sartoretto,
    • and Thomas Michel
    J. Biol. Chem. 2012 287: 29147-29158. First Published on July 6, 2012, doi:10.1074/jbc.M112.381517
Topic URL in Biochemical Society of Iran website:
http://biochemiran.com/find.php?item=1.58.466.en
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